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General Index


Before using those below tagged with "ML" read this!

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z


A
Abscesses, the clean up of; a project 
Abscesses, analogies of immune strategies
N-acetyl-glucosamine structure
Adenine structure
Adenine sythesis and catabolism
Adenovirus
Adenyl cyclase, allosteric inhibition by ATP
Adhesion, water to other things, lab
Agar petri plates general, types of...
Agar petri plates from scratch
Agar petri plates - not from scratch
Air foils, scalloped for greater lift
Albumin, analogies of immune strategies
Alkaline phosphatase per cell
Alleles, segregation of
Allosteric inhibition, adenyl cyclase
Alpha-helix structure
Alpha-keto-glutaric acid structure
American Society for Microbiology (ASM) 2003 presentation
Ammonium farm fertilizer vs nitrate
Amylase, lab
Amylase chromatography; project
Amylopectin
Amylose
Analogies


Analogies of bacterial pathogenicity
Angles, calculating using tangents
Animals, research on, law
Ant behavior (also see "Ants")
Antigens, bacterial surfaces
Antibacterial agents, testing for
Antibiotics, mechanisms of selected
Antibiotic resistance mechanisms
Antibiotic resistance tags ML
Antibiotics to map metabolic pathways ML
Antibodies, analogies of immune strategies
Antibody structure
Antibodies, monoclonal, production
Antilogs and logarithms
Antimicrobial agents, testing for
Antiseptics, cetavlon, series of projects
Antiserum, how to make
Antiviral inhibition ML
Ants, food preferences verus effort, a set of projects
A.P. Biology extensions, labs
Archeology, surveying for your own pyramid
Archimedes and the King's Crown (specific gravity)
Architecture and the prevention of disease
Ascytes fluid production
Aseptic transfer of a specific volume of liquid.
Astronomy projects for beginning beginners
Atlantic to the Pacific, fieldtrip
ATP structure
Autoradiography ML
Autoradiography ML
Autoradiography ML
Autoradiography - DNA ML

B
Bacteria, ancient
Bacterial conjugation; A.P. Biology extension lab
Bacterial cultures, what to do with new ones
Bacteriology, beginning lab
Bacteriology, beginning beginner's petri plate techniques
Bacteriology, beginning beginner's lab
Bacteriophages, lab
Balance, a simple homemade model
Bases, in nucleic acids
Beach sand, measurement of movement by waves
Beetle behavior
Behavior, animal; A.P. Biology extension lab
Biodegradation
Bioremediation
Biotechnology, a teaching paradigm
Biotin structure
biuret and color complex structures
Blood: analogy of separation of cell types
Blood: fractions of, and separation of cell types
BOD, water quality testing
Boiling point as affected by NaCl and EtOH
Bonds, chemical, analogy of
Brahe, Tycho: argument that the universe is finite
Bridges, bulsa; projects
Brownian Motion, lab

C
Cancer viruses
Capsule, bacterial, analogy of uses
Carbon electrodes, inexpensive substitute for platinum
Cartesian Diver
Cat behavior
Catalase, lab
Catalase kinetics, lab
Catalyst
Catechol oxidase, lab
Catechol oxidase inhibition, lab
Cell cultures ML
Cell disruption by repeared freezings and thawings, bacteria
Cellulose
Cellulose structure
Centrifugation, density gradient
Cetavlon, as an antiseptic, a series of projects
Chemical bond, analogy of
Chemistry teaching pedagogy
Chip Technology, DNA-Arrays
Chi-Square statistical analysis
Chitin
Chlorophyll structure
Chlorophyll, spectral absorption, lab
Chlorophyll and other pigments, chromatography
Chloroplast isolation lab
Chloroplast function, discovery ML
Chloroplasts, chlorophyll as controlled by light
Chlorosis (loss of chlorophyll in leaves)
Cholesterol structure
Cholesterol, "good" and "bad"
Chromatography analogy
Chromatography of amylase; project
Chromatography using chalk, food coloring
    (from: Lawrence Livermore National Laboratory Science & Technology Education Program)
Chromatography, paper, of plant pigments
Citric acid structure
Citric Acid Cycle
Clock mechanism in dsDNA-phage
Clock mechanism in RNA-phage
Coenzyme A structure
Coins and germs
Compass directions, finding using the sun
Compass directions, finding using the sun, alternate page
Competition, binding reactions ML
Complement (serum), analogies of immune strategies
Complement (serum), membrane penetration complex
Conductivity, chemical, use of and making a meter 
Conjugation in E.coli
Cosmos, finiteness of it
Coulter particle counter and sizer
Counting and sizing particles
Crash barrier physics project
Cube root of a number, deriving
Cultures, bacterial, what to do with new ones
Curriculum vitae, composing your, format of
Cytidine sythesis and catabolism
Cytochrome Pathway
Cytokines, analogies of immune strategies

D
Dairy Bacteria in cheeses
Dairy Bacteria as probiotics
Denaturization of protein by heat ML
Dendrochronology, study of tree rings, intro
Densitometer
Density gradients, making, NaBr, lab 
Deoxy-ribose structure 
Dextrose (glucose) structure
Diffusion, dyes in agar plates
Diffusion, lab 
Dihydroxyacetone phosphate (DHAP) structure 
Dipeptide, generalized structure
Directions, compass, finding using the sun
Disasters, making potable water
Disease and History
Disease control via coinage, railings, doorknobs, etc.
DNA


Dog behavior
Dose plots (survival curves) 
DPIP reaction structures
DTPA chelator of transuranium elements
Duck/Geese behavior
Dynamic Equilibrium of bacterial growth

E
Earth's orbital orientation
Eclipse, lunar, calculating relative size to earth
E. coli, general description
E. coli pedigree from K-12 to W3110
E.coli chromosomal evolution
E.coli Genetic Stock Center at Yale Univ.
E.coli slime production
Einstein's (Albert) heat capacity formula
Electrochemistry, introductory page
Electrodes, of carbon, inexpensive substitute for platinum
Electrolysis of water and salts
Electrolysis device, inexpensive
Electrolyte strength, testing, making a meter
Electrons, exploring their energies
Electron Transport
Electron Transport Oxidative Phosphorylation analogy
Electrophoresis analogy
Electrophoresis, inexpensive gel drying frame
Electrophoresis, horizontal chamber, making inexpensive
Electrophoresis, immuno- ML
Electrophoresis of Enzymes
Electrophoresis, PolyAcrylamide Gel (PAGE) ML
Electrophoresis, power supply construction
Electrophoresis, starch gel ML
Electroplating of metals
ELISA
Embden, Meyerhof, Parnas Glycolysis
Emission spectra of vaporized metals
Energetics analogies
Energy, kinetic, leading to chemical reactivity 
Energy Sources, animal, priority of usage, an analogy
Enol-pyruvic acid structure
Enthalpy
Entner-Douderoff Pathway, an alternate to glycolysis 
Enumeration, live bacteria
Environmental Science, a teaching paradigm
Environmental testing, ground water, BOD
Environmental water quality, fecal coliforms 
Enzymes, enzymology, labs
Enzyme kinetics, catalase, lab
Enzymes as analogs for vaccine studies
Enzyme-linked immunosorbant assay, ELISA
Equilibrium, examples
Equipment, making simple
Escherichia coli: see E. coli 
Ester, general structure 
Ethanol structure 
Ethylamine structure
Evolution: E.coli chromosome 
Evolution: Lateral (shrub) model
Exponentials, everyday examples for hands-on work
Eyes, how sharp are your eyes?

F 
F-plasmid
Fall colors, what triggers the change 
Fat, structure
Fat metabolism 
Fatty acid structure
Fatty acid metabolism
Fecal coliform testing
Fever, analogies of immune strategies
Fever and the control of infection
Fever and the control of infection 
Fieldtrip from Atlantic to the Pacific
First order reaction, simulation
Flame spectroscopy of vaporized metals 
Flowers, dyeing and tricks
Flower petals, importance, testing
Folic acid structure
Food microbiology, meat
Forensics: DNA testing for murder
Fragment insert orientation
Freezing point as affected by NaCl and EtOH
Freeze-thaw cell disruption 
Fructose structure
Fructose-6-phosphate structure 
Fructose diphosphate structures
Fumeric acid structure

G 
Galactose structure
Galileo, proofs that earth isn't center of universe
Galvanic cell, fruits to determine reduction potentials of metals
Gas Laws analogy
Gas Laws as a means to deriving chemical reactivity
Genes, Primordial, "urgenes"
Genes, jumping
Genetics, an overview
Genetic Expression, five founding facts
Genome organization, pufferfish vs human
Gibbs-Helmholz Equation
Global warming, effect on plants 
Glucose structure
Glucose polymers, side-view diagrams 
Glucose-6-phosphate structure 
Glyceraldehyde-3-phosphate (GAP) structure 
Glycerol (glycerin) structure 
Glycine structure
Glycogen 
Glycogen structures 
Glycolysis
Glycolysis, toxins and inhibitors of
Graph paper source
Graphing, semilogarithmically; growth, survival and decay curves
Griffith's Transforming Principle
Growth curves, graphing
Growth curves and dynamic steady state
Guanidine sythesis and catabolism
Guard-dog bacteria

H
HDL (high density lipids)
Heat capacity, measuring
Heat capacity as a means to deriving chemical reactivity
Heat of dissolution in water, measuring
Heat of fusion of water, measuring
Heat inactivation of proteins ML
Helix and helices, left & right handed structures 
Heme structure
Herbicides, general, soil inactivation of
Herpesviruses
Hershey column, RNA characterization
Hershey-Chase Expt "ML"
Hershey-Chase Nobel experiment ML 
Hexose, numbering of C's in structure
Hfr conjugation in E.coli
History and Disease
Homeobox genes
Hurricane, resistance for houses
Humans, research on, law
Hybridization, early history of RNA-DNA hybrids
Hybridization, plants ML
Hybridization of RNA and DNA ML
Hybridization, viruses ML
Hydrogen, production of by electrolysis 
Hydrogen bonding in polypeptides, structure 
Hydrogen bonding in water, structure
Hydronium ion (H3O+), effective size determination
Hydroxy-methyl-cytidine sythesis in T-even phages
Hydroxyl ion, effective size determination
Hyperchromic effect ML
Hyperchromic effect and nucleic acid indentification ML
Hyperchromic effect - dsRNA detection ML

I
IgG
Illusions, optical
Immunity factors, analogies of various strategies
Immunity, non-specific ML
Immunoelectrophoresis ML
Immunoglobulin structure
Infection, cell culture model, a project idea
Inhibition, allosteric, of adenyl cyclase
Inhibitors, antiviral ML
Inosinic acid (IMP) sythesis
Interferon
Interferon, analogies of immune strategies
Inventions: patent searching for beginners
Investing
Iodimetry using thiosulfate
Iodine, tincture, making of KI3 
Ion Exchange Chromatography analogy
IPTG structure 
Iso-citric acid structure
Isopycnography, making, lab using bacterial cells and NaBr 
Isotope labelling, specific for DNA ML

J
Jupiter, orbital orientation, Galilean moons, rotation

K
K-antigen, bacterial, see "Capsule"
Kidney infection, cell culture model, a project idea
Kinetic energy of atoms for chemical reactivity
Kinetics of enzymes of inhibition, lab
Kites, making very small ones
Koch's Postulates ML
Korkes, Gunsalus Pathway (pyrvate to AcCoA)
Krebs Cycle

L
Lac-operon
Lac-operon genetics
Lac-operon quiz, very tricky
Lactase control (both genetic and enzymatic)
Lactase, controls on activity, lab exercises
Lactase per cell under steady state growth 
Lactic acid structure 
Lactose structure
Lactose metabolism
Lambda bacteriophage
Lambda transduction ML
Lateral (shrub) model of evolution
Latitude, geographical, finding using the sun
Laws for research on human and animal subjects
LDL (low density lipids) 
Leaves, UV protection in
Lipoic acid structure
Lipopolysaccharide, or 
LPS structure
Lipopolysaccharide, bacterial, analogy of uses of
Lipopolysaccharide per cell
Liquid, aseptic transfer of a specific volume of
Log-phase growth vs steady state dynamics
Logarithms and antilogs
LPS, bacterial, analogy of uses of
Lucite®, making devices from it
Lunar eclipse, calculating relative size to earth
Lymphocyte isolation from blood.
Lymphocytes, phagocytic, analogies of immune strategies
Lysates, cellular ML 
Lysogeny
Lysozyme, analogies of immune strategies
Lytic, phage

M
MacConkey agar, utilizing un-sterilized
Macrophages, analogies of immune strategies
MAK column, RNA characterization 
Malonic acid structure
Mars, orbital orientation
Massing, a simple homemade balance
Mathematics of the spectrum of radioactive decay, finding the equation
Meat and germs
Membrane component structures
Meselson-Stahl Expt modified using radioisotopes "ML"
Metabolism for beginning beginners, bedrock fundamentals
Metabolic pathways
Metabolic pathways, elucidation using antibiotics ML
Metabolism, historical notes
Metals, self-sterilizing
Micro-RNA's
Microscope - terminology
Milk and germs
Mobile homes, wind, hurricane, resistance for
Model systems ML
Moles and molarity, an "animole" analogy
Moles, molar, equivalents
Molecular biology prologue
Molecular Biology
Molecular Sieve analogy
Molecular sieves and nucleic acids
Momentum transfer
Monoclonal antibody production
Moon, eclipse, calculating relative size to earth
Moon, orbital orientation, rotational speed
Motor oils, viscosities versus temperature
mRNA, discovery of
Mutagenic agents
Mutation detection in bacteria ML 

N
NAD structure, or
paper model
Needles, floating on water, lab
New Economy, investing
Newspaper use in making potable water in disaster areas
Nitrate farm fertilizer vs ammonia
Nitrogen Pool
Noon, finding local solar noon using the sun
Nucleic acids (RNA and DNA)


Nucleus, as storage location of genes, historicalNutrient agar petri plates from scratch

O
O-antigen, bacterial, see "Lipopolysaccharide"
Oil structure
Oncogenic viruses 
Oncoviruses
ONPG structure
Optical illusions
Order of reaction, simulation
Organic chemistry teaching pedagogy
Organic chemistry nomenclature for beginning beginners
Osmosis, lab
Osmotic Pressure, lab
Owl regurgitation pellets, studying contents, use of a dipiliary chemical
Oxalo-acetic acid structure
Oxalo-succinic acid structure
Oxidation of thiosulfate as in iodiometry
Oxygen, production of by electrolysis

P
P/O ratio, study aid to the pathways
Paleobacteria
Paper chromatography of plant pigments
Particle counting and sizing
Patent searching for beginners
Paternity testing, modelling
Paternity, lab modelling
Pathogenicity, bacterial
Pathogenicity, bacterial, analogies of
Paul D. Camp Community College (author's current teaching assignments)
Penicillin structure
Penicillin, mechanism of
Penicillin resistance mechanism
"Pentetate" chelator of transuranium elements
Pentose shunt
Permeabilization of cells ML
Petals, flower, testing importance of
Petri plates and Nutrient agar, totally homemade plates and NA
Petri plates, general, types of agars...
Petri plates, plastic, sterilizing of
Petri plate pouring
pH, an introduction
Phages, lab
Phage, clock mechanism
Phages, miscellaneous
Phage MS2 chromosome structure
Phage typing
Phage propagation
Phages, lysogeny
Phages, RNA genomes
Phage T4, part 1, dsDNA phage
Phage T4, part 2
Phage φX174, ssDNA phage
Phagocytosis, analogies of immune strategies
Phagocytosis, project, modelling.
Phagocytosis, overcoming acid environments in abscesses
Phenol extraction of nucleic acids
Phospho-carboxylic acid anhydride structure
Phospho-enol-pyruvic acid (PEP) structure
Phospho-ester bond, general structure
2-Phospho-glyceric acid (2PGA) structure
3-Phospho-glyceric acid (3PGA) structure
Photosynthesis, global warming and nitrate
Photosynthesis and pigments A.P. Biology Expansion
Photosynthesis, site of, discovery ML
Pigments, plants and paper chromatography
Pigments and photosynthesis
Plants, growth rates, racing plants, a project
Planets, finding and viewing
Plant viruses 
Plastic, sterilization of
Plate counts
Plate spreading for plate counts
Plasmid, modelling
Plasmids and Viruses
Plasmid insert orientation
Plastic, making devices from it
Platinum, electrochemistry electrodes, inexpensive substitute
Plexiglas®, making devices from it
Pneumococcus as in Griffith's Transforming Principle
Poisson distribution statistical problems
Polymerase Chain Reaction (PCR) ML
Polymorphonuclear lymphocytes, analogies of immune strategies
Polypeptide structure
Polysaccharide production in E.coli
Potable water, making in disaster areas
Power, varying electrical
Poxviruses
Pregnancy testing, theory of device
Pressure cooker, instructions for use
Prime number generator, a candidate for
Prions
Probiotics
Probiotics ML
Probiotic organisms, analogies of immune strategies
Project paper, an annotated example
Projects, from start to afterwards
Project paper, grading rubric
Protease, lab
Protein, primary structure, kit for classroom

  • Sequences, amino acids found in protein; search engine
    Proteins, heat inactivation ML
    Pufferfish, genome organization vis-a-vis human
    Pulse-Chase with radioisotopes ML
    Purine sythesis and catabolism
    Pus, value of and elimination of; an expt
    Pyramid, Egyptian, surveying your own
    Pyrimidine sythesis and catabolism
    Pyruvic acid structure

    Q

    R
    Radioactive decay, finding the math equation for the energy spectrum
    Radioisotope tagging ML
    Rainbow for printing on a transparency
    Reaction order, simulation
    Reactions, chemical, regarding kinetic energy
    Redox as in iodimetry
    Reduction of iodine as in iodimetry
    Reduction Potentials, inexpensive lab exercise
    Refractometer use
    Replicon: replication of bacterial chromosome
    Repressor, genetic, detection of ML
    Repressor inactivation by heat ML
    Resistance, antibiotic mechanisms
    Restriction endonuclease, modelling
    Resumé, composing your, format of
    Ribose structure
    RNA
    RNA stick form structure


    Retroviruses
    RoundUp®, general, soil inactivation of

    S
    Salmonella, a project: modelling phagocytosis.
    Sand, measurement of movement of beach sand by waves
    Saturn, orbit, rings, orientations
    Scales, a simple homemade model
    Scientific Method
    Second order reaction, simulation
    Sedimentation, boundary
    Sedimentation centrifugation of RNA's
    Segregation of alleles
    Self-sterilizing metals

  • Sequences of bases found in DNA; of amino acids in proteins; an NIH search engine
    Sewage treatment
    Sewage treatment, elimination of viruses ML
    Sexduction in E.coli
    Shadow, path of solar shadows, compass directions
    Shampoo use in making potable water in disaster areas
    Solar system, orientation of planets' orbital planes
    Solutions, making of
    Solutions, making of, quiz questions
    SOS, intercellular alarms, analogies of immune strategies
    Spectracide®, general, soil inactivation of
    Spectroscopy, lab
    Spectrum for printing on a transparency
    Spreading plates for bacterial enumeration
    Squirrel behavior
    Starch, or this, too
    Steady State, projects involving E. coli.
    Stealth, bacterial, analogy in pathology
    Stems, water movement within, a project
    Sterilize, used plastic petri plates
    Sterilizer, pressure cooker, instructions for use
    Steroid, generalized structure
    Streptomycin, and its structure
    Streptomycin, mechanism of
    String theory, a first step at understanding it
    Structures, various biochemicals
    Success as a student
    Succinic acid structure
    Sucrose gradient sedimentation centrifugation of RNA's
    Sulfa, sulfanilamide, and its structure
    Sulfa, antimicrobial mechanism of
    Sulfuric acid structure
    Sunscreen, natural ones on plants and animals
    Supercoiled DNA, modelling
    Surface antigens, bacterial
    Surface tension, simple lab
    Surface tension, precision method
    Surfaces and germs
    Survival curves, graphing
    Survival of the Fittest; biochemistry game

    T
    Tangents and calculating angles subtended by vision
    Tangents, simplified
    Temperature sensitivity ML
    Temperature sensitivity ML
    Testosterone structure
    Tetracycline, mechanism of
    Theory of Everything
    Tn10 transposon ML
    Thermodynamics for Preschoolers
    Thiamine (vitamin B6) structure
    Thioglycolate as used in iodimetry
    Thiosulfate as used in iodimetry
    Thomas Nelson Community College (author's current teaching assignments)
    Threonine structure
    Thymidine sythesis
    Thymine (as in DNA) structure
    Titration, redox with iodine and thiosulfate
    Toxins and inhibitors of glycolysis
    Transduction
    Transduction, lambda ML
    Transfer aseptically of a specific volume of liquid.
    Transforming Principle (Griffith's Expt)
    Transpiration, lab
    Transpiration, model, lab
    Transpiration, a project
    Transposons
    Tree ring studies ("dendrochronology")
    Tree trunk twist/torque, a project
    TriCarboxylic Acid Cycle
    Tryptone agar plates, making of them
    Tubercles, analogies of immune strategies
    Typhoid fever, phagocytosis, project, modelling.
    Tyrosinase, lab
    Tyrosinase inhibition, lab

    U
    Ultraviolet light, natural protection against
    Universe, not infinite
    Uracil structure
    Uracil sythesis and catabolism
    Urea Cycle
    Urgenes - the first or primordial genes
    Utah, geology fieldtrip
    UV light, natural protection against

    V
    Vaccines, heat stability, expt with enzyme analogs
    van der Waals Forces, projects
    Venus, planet's orbit
    Viability counts, bacterial
    Viroids
    Virology course (author's former course)
    Virus, anatomy
    Viruses, cancer
    Viruses, eukaryotic survey
    Viruses, general
    Viruses, lysogeny
    Viruses, plant 
    Viruses and Plasmids
    Viruses, sewage treatment ML
    Viscosities versus temperature of motor oils
    Viscosity, water, lab
    Vision, gender differences
    Vision, how sharp are your eyes?
    Visual acuity

    W
    Water, general properties, molecular level
    Water, purifying in disaster areas.
    Water, electrolysis and composition of
    Water, physical properties, lab
    Water testing, BOD
    Wealthy, becoming
    Weighing, a simple homemade scale
    Wind, hurricane, resistance for houses
    Wings, scalloped for greater lift

    X
    Xylem, water movement within, a project

    Y

    Z
    Zero order reaction, simulation 
    Zinc therapy


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